IL_6GQ1_043

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UUCCGG*UUGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQ1_043 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.3633

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6GQ1|1|1|U|1014
6GQ1|1|1|U|1015
6GQ1|1|1|C|1016
6GQ1|1|1|C|1017
6GQ1|1|1|G|1018
6GQ1|1|1|G|1019
*
6GQ1|1|1|U|1033
6GQ1|1|1|U|1034
6GQ1|1|1|G|1035
6GQ1|1|1|A|1036

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain J

60S ribosomal protein L11-B