3D structure

PDB id
6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
UUCCGG*UUGA
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GQ1_043 not in the Motif Atlas
Geometric match to IL_4V88_429
Geometric discrepancy: 0.3633
The information below is about IL_4V88_429
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_30621.4
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
66

Unit IDs

6GQ1|1|1|U|1014
6GQ1|1|1|U|1015
6GQ1|1|1|C|1016
6GQ1|1|1|C|1017
6GQ1|1|1|G|1018
6GQ1|1|1|G|1019
*
6GQ1|1|1|U|1033
6GQ1|1|1|U|1034
6GQ1|1|1|G|1035
6GQ1|1|1|A|1036

Current chains

Chain 1
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain J
60S ribosomal protein L11-B

Coloring options:


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