3D structure

PDB id
6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
UCUAGACAGC*GCCGAA
Length
16 nucleotides
Bulged bases
6GQ1|1|1|A|1221
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6GQ1|1|1|U|1218
6GQ1|1|1|C|1219
6GQ1|1|1|U|1220
6GQ1|1|1|A|1221
6GQ1|1|1|G|1222
6GQ1|1|1|A|1223
6GQ1|1|1|C|1224
6GQ1|1|1|A|1225
6GQ1|1|1|G|1226
6GQ1|1|1|C|1227
*
6GQ1|1|1|G|1282
6GQ1|1|1|C|1283
6GQ1|1|1|C|1284
6GQ1|1|1|G|1285
6GQ1|1|1|A|1286
6GQ1|1|1|A|1287

Current chains

Chain 1
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain P0
60S acidic ribosomal protein P0
Chain S
60S ribosomal protein L20-A
Chain m
Ubiquitin-60S ribosomal protein L40

Coloring options:

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