IL_6GQ1_064

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

6GQ1|1|1|U|1820, 6GQ1|1|1|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQ1_064 not in the Motif Atlas

Geometric match to IL_4YAZ_007

Geometric discrepancy: 0.2943

The information below is about IL_4YAZ_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

6GQ1|1|1|G|1623
6GQ1|1|1|G|1624
*
6GQ1|1|1|U|1819
6GQ1|1|1|U|1820
6GQ1|1|1|U|1821
6GQ1|1|1|C|1822

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain g

60S ribosomal protein L34-A

Chain k

60S ribosomal protein L38