IL_6GQ1_086

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQ1_086 not in the Motif Atlas

Geometric match to IL_4PDB_001

Geometric discrepancy: 0.2454

The information below is about IL_4PDB_001

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_36516.3

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

6GQ1|1|1|G|2206
6GQ1|1|1|A|2207
6GQ1|1|1|A|2208
6GQ1|1|1|U|2209
6GQ1|1|1|G|2210
*
6GQ1|1|1|C|2235
6GQ1|1|1|G|2236
6GQ1|1|1|C|2237

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AX

Transfer RNA; tRNA