IL_6GQ1_098

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GGAG*CGCCAGUGAAAUAC

Length

18 nucleotides

Bulged bases

6GQ1|1|1|C|2479, 6GQ1|1|1|U|2487

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQ1|1|1|G|2466
6GQ1|1|1|G|2467
6GQ1|1|1|A|2468
6GQ1|1|1|G|2469
*
6GQ1|1|1|C|2476
6GQ1|1|1|G|2477
6GQ1|1|1|C|2478
6GQ1|1|1|C|2479
6GQ1|1|1|A|2480
6GQ1|1|1|G|2481
6GQ1|1|1|U|2482
6GQ1|1|1|G|2483
6GQ1|1|1|A|2484
6GQ1|1|1|A|2485
6GQ1|1|1|A|2486
6GQ1|1|1|U|2487
6GQ1|1|1|A|2488
6GQ1|1|1|C|2489

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain AX

Transfer RNA; tRNA