3D structure

PDB id
6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
GUCAAG*CGACAU
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6GQ1|1|1|G|2834
6GQ1|1|1|U|2835
6GQ1|1|1|C|2836
6GQ1|1|1|A|2837
6GQ1|1|1|A|2838
6GQ1|1|1|G|2839
*
6GQ1|1|1|C|2849
6GQ1|1|1|G|2850
6GQ1|1|1|A|2851
6GQ1|1|1|C|2852
6GQ1|1|1|A|2853
6GQ1|1|1|U|2854

Current chains

Chain 1
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain I
60S ribosomal protein L10
Chain m
Ubiquitin-60S ribosomal protein L40

Coloring options:

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