IL_6GQ1_107

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GUCAAG*CGACAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQ1|1|1|G|2834
6GQ1|1|1|U|2835
6GQ1|1|1|C|2836
6GQ1|1|1|A|2837
6GQ1|1|1|A|2838
6GQ1|1|1|G|2839
*
6GQ1|1|1|C|2849
6GQ1|1|1|G|2850
6GQ1|1|1|A|2851
6GQ1|1|1|C|2852
6GQ1|1|1|A|2853
6GQ1|1|1|U|2854

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain I

60S ribosomal protein L10

Chain m

Ubiquitin-60S ribosomal protein L40