3D structure

PDB id
6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
AUA*UUU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GQ1_123 not in the Motif Atlas
Homologous match to IL_5TBW_122
Geometric discrepancy: 0.1925
The information below is about IL_5TBW_122
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

6GQ1|1|1|A|3168
6GQ1|1|1|U|3169
6GQ1|1|1|A|3170
*
6GQ1|1|1|U|3280
6GQ1|1|1|U|3281
6GQ1|1|1|U|3282

Current chains

Chain 1
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain P
60S ribosomal protein L17-A
Chain f
60S ribosomal protein L33-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1522 s