IL_6GQ1_139

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UCUCAAA*UGACAAUA

Length

15 nucleotides

Bulged bases

6GQ1|1|2|A|468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQ1|1|2|U|35
6GQ1|1|2|C|36
6GQ1|1|2|U|37
6GQ1|1|2|C|38
6GQ1|1|2|A|39
6GQ1|1|2|A|40
6GQ1|1|2|A|41
*
6GQ1|1|2|U|466
6GQ1|1|2|G|467
6GQ1|1|2|A|468
6GQ1|1|2|C|469
6GQ1|1|2|A|470
6GQ1|1|2|A|471
6GQ1|1|2|U|472
6GQ1|1|2|A|473

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AO

40S ribosomal protein S24-A

Chain AZ

Elongation factor 2

Chain u

40S ribosomal protein S4-A

Chain z

40S ribosomal protein S9-A