3D structure

PDB id
6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
AUU*ACU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GQ1_151 not in the Motif Atlas
Geometric match to IL_4LFB_047
Geometric discrepancy: 0.2538
The information below is about IL_4LFB_047
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_28037.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
65

Unit IDs

6GQ1|1|2|A|206
6GQ1|1|2|U|207
6GQ1|1|2|U|208
*
6GQ1|1|2|A|257
6GQ1|1|2|C|258
6GQ1|1|2|U|259

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain u
40S ribosomal protein S4-A
Chain y
40S ribosomal protein S8-A

Coloring options:


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