IL_6GQ1_154

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GCC*GUGC

Length

7 nucleotides

Bulged bases

6GQ1|1|2|U|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQ1_154 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.2

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6GQ1|1|2|G|274
6GQ1|1|2|C|275
6GQ1|1|2|C|276
*
6GQ1|1|2|G|279
6GQ1|1|2|U|280
6GQ1|1|2|G|281
6GQ1|1|2|C|282

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain w

40S ribosomal protein S6-A