IL_6GQ1_164

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQ1_164 not in the Motif Atlas

Geometric match to IL_5TBW_095

Geometric discrepancy: 0.2169

The information below is about IL_5TBW_095

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

6GQ1|1|2|G|514
6GQ1|1|2|A|515
6GQ1|1|2|G|516
*
6GQ1|1|2|C|536
6GQ1|1|2|G|537
6GQ1|1|2|A|538
6GQ1|1|2|G|539
6GQ1|1|2|G|540
6GQ1|1|2|A|541
6GQ1|1|2|A|542
6GQ1|1|2|C|543

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AU

40S ribosomal protein S30-A

Chain z

40S ribosomal protein S9-A