IL_6GQ1_174

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GCUAACCUUG*CUUGGCGAAC

Length

20 nucleotides

Bulged bases

6GQ1|1|2|U|728, 6GQ1|1|2|A|733, 6GQ1|1|2|A|734

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQ1|1|2|G|703
6GQ1|1|2|C|704
6GQ1|1|2|U|705
6GQ1|1|2|A|706
6GQ1|1|2|A|707
6GQ1|1|2|C|708
6GQ1|1|2|C|709
6GQ1|1|2|U|710
6GQ1|1|2|U|711
6GQ1|1|2|G|712
*
6GQ1|1|2|C|726
6GQ1|1|2|U|727
6GQ1|1|2|U|728
6GQ1|1|2|G|729
6GQ1|1|2|G|730
6GQ1|1|2|C|731
6GQ1|1|2|G|732
6GQ1|1|2|A|733
6GQ1|1|2|A|734
6GQ1|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain u

40S ribosomal protein S4-A