IL_6GQ1_180

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQ1_180 not in the Motif Atlas

Homologous match to IL_4V88_428

Geometric discrepancy: 0.1193

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

6GQ1|1|2|A|865
6GQ1|1|2|G|866
*
6GQ1|1|2|C|962
6GQ1|1|2|A|963
6GQ1|1|2|U|964
6GQ1|1|2|U|965

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AD

40S ribosomal protein S13

Chain AM

40S ribosomal protein S22-A

Chain AR

40S ribosomal protein S27-A