IL_6GQ1_181

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

6GQ1|1|2|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQ1_181 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.2123

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6GQ1|1|2|G|867
6GQ1|1|2|G|868
6GQ1|1|2|A|869
6GQ1|1|2|C|870
*
6GQ1|1|2|G|957
6GQ1|1|2|U|958
6GQ1|1|2|U|959
6GQ1|1|2|U|960
6GQ1|1|2|U|961

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AD

40S ribosomal protein S13

Chain AM

40S ribosomal protein S22-A

Chain AR

40S ribosomal protein S27-A