IL_6GQ1_201

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6GQ1|1|2|U|1269

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQ1_201 not in the Motif Atlas

Homologous match to IL_4V88_449

Geometric discrepancy: 0.4078

The information below is about IL_4V88_449

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6GQ1|1|2|G|1268
6GQ1|1|2|U|1269
6GQ1|1|2|G|1270
*
6GQ1|1|2|C|1440
6GQ1|1|2|C|1441

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AA

40S ribosomal protein S10-A

Chain AT

40S ribosomal protein S29-A

Chain AZ

Elongation factor 2

Chain t

40S ribosomal protein S3