3D structure

PDB id
6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
GGGAUA*UUCAAC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GQ1_213 not in the Motif Atlas
Homologous match to IL_4V88_462
Geometric discrepancy: 0.3815
The information below is about IL_4V88_462
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_82488.1
Basepair signature
cWW-tSH-tSH-tHS-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6GQ1|1|2|G|1540
6GQ1|1|2|G|1541
6GQ1|1|2|G|1542
6GQ1|1|2|A|1543
6GQ1|1|2|U|1544
6GQ1|1|2|A|1545
*
6GQ1|1|2|U|1566
6GQ1|1|2|U|1567
6GQ1|1|2|C|1568
6GQ1|1|2|A|1569
6GQ1|1|2|A|1570
6GQ1|1|2|C|1571

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain AI
40S ribosomal protein S18-A
Chain AJ
40S ribosomal protein S19-A

Coloring options:


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