IL_6GQ1_227

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GAAGGG*CUCCAUC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQ1|1|2|G|1692
6GQ1|1|2|A|1693
6GQ1|1|2|A|1694
6GQ1|1|2|G|1695
6GQ1|1|2|G|1696
6GQ1|1|2|G|1697
*
6GQ1|1|2|C|1703
6GQ1|1|2|U|1704
6GQ1|1|2|C|1705
6GQ1|1|2|C|1706
6GQ1|1|2|A|1707
6GQ1|1|2|U|1708
6GQ1|1|2|C|1709

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain w

40S ribosomal protein S6-A