IL_6GQ1_240

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CAGAA*UUUUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQ1|1|1|C|969
6GQ1|1|1|A|970
6GQ1|1|1|G|971
6GQ1|1|1|A|972
6GQ1|1|1|A|973
*
6GQ1|1|1|U|1108
6GQ1|1|1|U|1109
6GQ1|1|1|U|1110
6GQ1|1|1|U|1111
6GQ1|1|1|A|1112
6GQ1|1|1|G|1113

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain L

60S ribosomal protein L13-A

Chain Q

60S ribosomal protein L18-A

Chain T

60S ribosomal protein L21-A

Chain a

60S ribosomal protein L28

Chain b

60S ribosomal protein L29