IL_6GQ1_242
3D structure
- PDB id
- 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- CUCAUCAGACACCACAAAA*UGAAAAUGGAUGGCGCUCAAG
- Length
- 40 nucleotides
- Bulged bases
- 6GQ1|1|1|U|1191, 6GQ1|1|1|C|1192, 6GQ1|1|1|C|1196, 6GQ1|1|1|C|1201, 6GQ1|1|1|A|1302, 6GQ1|1|1|U|1305, 6GQ1|1|1|G|1306, 6GQ1|1|1|C|1316, 6GQ1|1|1|A|1318
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GQ1|1|1|C|1187
6GQ1|1|1|U|1188
6GQ1|1|1|C|1189
6GQ1|1|1|A|1190
6GQ1|1|1|U|1191
6GQ1|1|1|C|1192
6GQ1|1|1|A|1193
6GQ1|1|1|G|1194
6GQ1|1|1|A|1195
6GQ1|1|1|C|1196
6GQ1|1|1|A|1197
6GQ1|1|1|C|1198
6GQ1|1|1|C|1199
6GQ1|1|1|A|1200
6GQ1|1|1|C|1201
6GQ1|1|1|A|1202
6GQ1|1|1|A|1203
6GQ1|1|1|A|1204
6GQ1|1|1|A|1205
*
6GQ1|1|1|U|1299
6GQ1|1|1|G|1300
6GQ1|1|1|A|1301
6GQ1|1|1|A|1302
6GQ1|1|1|A|1303
6GQ1|1|1|A|1304
6GQ1|1|1|U|1305
6GQ1|1|1|G|1306
6GQ1|1|1|G|1307
6GQ1|1|1|A|1308
6GQ1|1|1|U|1309
6GQ1|1|1|G|1310
6GQ1|1|1|G|1311
6GQ1|1|1|C|1312
6GQ1|1|1|G|1313
6GQ1|1|1|C|1314
6GQ1|1|1|U|1315
6GQ1|1|1|C|1316
6GQ1|1|1|A|1317
6GQ1|1|1|A|1318
6GQ1|1|1|G|1319
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain B
- 60S ribosomal protein L3
- Chain F
- 60S ribosomal protein L7-A
- Chain H
- 60S ribosomal protein L9-A
- Chain I
- 60S ribosomal protein L10
- Chain M
- 60S ribosomal protein L14-A
- Chain O
- 60S ribosomal protein L16-A
- Chain S
- 60S ribosomal protein L20-A
- Chain f
- 60S ribosomal protein L33-A
- Chain m
- Ubiquitin-60S ribosomal protein L40
Coloring options: