IL_6GQ1_245

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UUGUGG*CUUUUUG

Length

13 nucleotides

Bulged bases

6GQ1|1|1|U|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQ1|1|1|U|2826
6GQ1|1|1|U|2827
6GQ1|1|1|G|2828
6GQ1|1|1|U|2829
6GQ1|1|1|G|2830
6GQ1|1|1|G|2831
*
6GQ1|1|1|C|2857
6GQ1|1|1|U|2858
6GQ1|1|1|U|2859
6GQ1|1|1|U|2860
6GQ1|1|1|U|2861
6GQ1|1|1|U|2862
6GQ1|1|1|G|2863

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain I

60S ribosomal protein L10