IL_6GQ1_249

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

6GQ1|1|2|U|320, 6GQ1|1|2|C|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQ1_249 not in the Motif Atlas

Homologous match to IL_8P9A_392

Geometric discrepancy: 0.2142

The information below is about IL_8P9A_392

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47074.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6GQ1|1|2|U|318
6GQ1|1|2|U|319
6GQ1|1|2|U|320
6GQ1|1|2|C|321
6GQ1|1|2|G|322
6GQ1|1|2|A|323
*
6GQ1|1|2|U|345
6GQ1|1|2|G|346

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain AB

40S ribosomal protein S11-A

Chain y

40S ribosomal protein S8-A