IL_6GQ1_254

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GGGAUAG*CUUCAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQ1_254 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.3423

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

6GQ1|1|2|G|1540
6GQ1|1|2|G|1541
6GQ1|1|2|G|1542
6GQ1|1|2|A|1543
6GQ1|1|2|U|1544
6GQ1|1|2|A|1545
6GQ1|1|2|G|1546
*
6GQ1|1|2|C|1565
6GQ1|1|2|U|1566
6GQ1|1|2|U|1567
6GQ1|1|2|C|1568
6GQ1|1|2|A|1569
6GQ1|1|2|A|1570
6GQ1|1|2|C|1571

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AI

40S ribosomal protein S18-A

Chain AJ

40S ribosomal protein S19-A