IL_6GQ1_259
3D structure
- PDB id
- 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- CGGAAUU*GGAGAUG
- Length
- 14 nucleotides
- Bulged bases
- 6GQ1|1|1|U|1716, 6GQ1|1|1|A|1729
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GQ1_259 not in the Motif Atlas
- Homologous match to IL_8CRE_078
- Geometric discrepancy: 0.1788
- The information below is about IL_8CRE_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_69543.3
- Basepair signature
- cWW-tSH-L-R-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
6GQ1|1|1|C|1711
6GQ1|1|1|G|1712
6GQ1|1|1|G|1713
6GQ1|1|1|A|1714
6GQ1|1|1|A|1715
6GQ1|1|1|U|1716
6GQ1|1|1|U|1717
*
6GQ1|1|1|G|1727
6GQ1|1|1|G|1728
6GQ1|1|1|A|1729
6GQ1|1|1|G|1730
6GQ1|1|1|A|1731
6GQ1|1|1|U|1732
6GQ1|1|1|G|1733
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain AD
- 40S ribosomal protein S13
- Chain R
- 60S ribosomal protein L19-A
- Chain Z
- 60S ribosomal protein L27-A
- Chain c
- 60S ribosomal protein L30
- Chain g
- 60S ribosomal protein L34-A
- Chain p
- 60S ribosomal protein L43-A
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