IL_6GQV_002

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

6GQV|1|1|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQV_002 not in the Motif Atlas

Homologous match to IL_5TBW_003

Geometric discrepancy: 0.1758

The information below is about IL_5TBW_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6GQV|1|1|A|13
6GQV|1|1|U|14
6GQV|1|1|C|15
*
6GQV|1|4|G|144
6GQV|1|4|U|145

Current chains

Chain 1

25S ribosomal RNA

Chain 4

5.8S ribosomal RNA

Nearby chains

Chain N

60S ribosomal protein L15-A

Chain X

60S ribosomal protein L25