IL_6GQV_042

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UAC*GA

Length

5 nucleotides

Bulged bases

6GQV|1|1|A|1075

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQV_042 not in the Motif Atlas

Geometric match to IL_5J7L_039

Geometric discrepancy: 0.1968

The information below is about IL_5J7L_039

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

6GQV|1|1|U|1074
6GQV|1|1|A|1075
6GQV|1|1|C|1076
*
6GQV|1|1|G|1083
6GQV|1|1|A|1084

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain T

60S ribosomal protein L21-A

Chain b

60S ribosomal protein L29