IL_6GQV_066

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQV_066 not in the Motif Atlas

Geometric match to IL_4WF9_007

Geometric discrepancy: 0.2192

The information below is about IL_4WF9_007

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6GQV|1|1|C|1670
6GQV|1|1|C|1671
*
6GQV|1|1|G|1776
6GQV|1|1|U|1777
6GQV|1|1|G|1778

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain g

60S ribosomal protein L34-A