IL_6GQV_092

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGGAG*CGCCAGUGAAAUACC

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQV|1|1|G|2465
6GQV|1|1|G|2466
6GQV|1|1|G|2467
6GQV|1|1|A|2468
6GQV|1|1|G|2469
*
6GQV|1|1|C|2476
6GQV|1|1|G|2477
6GQV|1|1|C|2478
6GQV|1|1|C|2479
6GQV|1|1|A|2480
6GQV|1|1|G|2481
6GQV|1|1|U|2482
6GQV|1|1|G|2483
6GQV|1|1|A|2484
6GQV|1|1|A|2485
6GQV|1|1|A|2486
6GQV|1|1|U|2487
6GQV|1|1|A|2488
6GQV|1|1|C|2489
6GQV|1|1|C|2490

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AY

Transfer RNA; tRNA

Chain BA

60S ribosomal protein L1-A