IL_6GQV_100
3D structure
- PDB id
- 6GQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UCAAG*CGACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GQV_100 not in the Motif Atlas
- Homologous match to IL_8C3A_114
- Geometric discrepancy: 0.2118
- The information below is about IL_8C3A_114
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65585.1
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6GQV|1|1|U|2835
6GQV|1|1|C|2836
6GQV|1|1|A|2837
6GQV|1|1|A|2838
6GQV|1|1|G|2839
*
6GQV|1|1|C|2849
6GQV|1|1|G|2850
6GQV|1|1|A|2851
6GQV|1|1|C|2852
6GQV|1|1|A|2853
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain I
- 60S ribosomal protein L10
- Chain m
- Ubiquitin-60S ribosomal protein L40
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