IL_6GQV_120
3D structure
- PDB id
- 6GQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CAACG*UUG
- Length
- 8 nucleotides
- Bulged bases
- 6GQV|1|1|U|3259
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GQV_120 not in the Motif Atlas
- Homologous match to IL_8C3A_133
- Geometric discrepancy: 0.2399
- The information below is about IL_8C3A_133
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60154.1
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
6GQV|1|1|C|3225
6GQV|1|1|A|3226
6GQV|1|1|A|3227
6GQV|1|1|C|3228
6GQV|1|1|G|3229
*
6GQV|1|1|U|3258
6GQV|1|1|U|3259
6GQV|1|1|G|3260
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein L6-A
- Chain M
- 60S ribosomal protein L14-A
- Chain f
- 60S ribosomal protein L33-A
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