IL_6GQV_155

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

6GQV|1|2|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQV_155 not in the Motif Atlas

Homologous match to IL_8C3A_418

Geometric discrepancy: 0.5876

The information below is about IL_8C3A_418

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

6GQV|1|2|A|481
6GQV|1|2|U|482
*
6GQV|1|2|A|505
6GQV|1|2|A|506
6GQV|1|2|U|507

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AU

40S ribosomal protein S30-A

Chain z

40S ribosomal protein S9-A