IL_6GQV_166

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GCUAACCUUG*CUUGGCGAAC

Length

20 nucleotides

Bulged bases

6GQV|1|2|U|728, 6GQV|1|2|G|729

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQV|1|2|G|703
6GQV|1|2|C|704
6GQV|1|2|U|705
6GQV|1|2|A|706
6GQV|1|2|A|707
6GQV|1|2|C|708
6GQV|1|2|C|709
6GQV|1|2|U|710
6GQV|1|2|U|711
6GQV|1|2|G|712
*
6GQV|1|2|C|726
6GQV|1|2|U|727
6GQV|1|2|U|728
6GQV|1|2|G|729
6GQV|1|2|G|730
6GQV|1|2|C|731
6GQV|1|2|G|732
6GQV|1|2|A|733
6GQV|1|2|A|734
6GQV|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain u

40S ribosomal protein S4-A