IL_6GQV_171

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

ACGUUU*AUCGU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQV_171 not in the Motif Atlas

Homologous match to IL_8P9A_416

Geometric discrepancy: 0.5326

The information below is about IL_8P9A_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQV|1|2|A|817
6GQV|1|2|C|818
6GQV|1|2|G|819
6GQV|1|2|U|820
6GQV|1|2|U|821
6GQV|1|2|U|822
*
6GQV|1|2|A|850
6GQV|1|2|U|851
6GQV|1|2|C|852
6GQV|1|2|G|853
6GQV|1|2|U|854

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain x

40S ribosomal protein S7-A