IL_6GQV_176

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

6GQV|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQV_176 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.2191

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6GQV|1|2|U|893
6GQV|1|2|U|894
6GQV|1|2|G|895
6GQV|1|2|U|896
6GQV|1|2|C|897
6GQV|1|2|A|898
6GQV|1|2|G|899
*
6GQV|1|2|C|910
6GQV|1|2|U|911
6GQV|1|2|U|912
6GQV|1|2|G|913
6GQV|1|2|G|914
6GQV|1|2|A|915
6GQV|1|2|U|916
6GQV|1|2|U|917
6GQV|1|2|U|918
6GQV|1|2|A|919

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain A

60S ribosomal protein L2-A

Chain AE

40S ribosomal protein S14-B

Chain r

40S ribosomal protein S1-A