IL_6GQV_186

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

ACCAC*GUCCCU

Length

11 nucleotides

Bulged bases

6GQV|1|2|C|1158, 6GQV|1|2|C|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQV|1|2|A|1157
6GQV|1|2|C|1158
6GQV|1|2|C|1159
6GQV|1|2|A|1160
6GQV|1|2|C|1161
*
6GQV|1|2|G|1616
6GQV|1|2|U|1617
6GQV|1|2|C|1618
6GQV|1|2|C|1619
6GQV|1|2|C|1620
6GQV|1|2|U|1621

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AG

40S ribosomal protein S16-A

Chain AK

40S ribosomal protein S20

Chain AS

40S ribosomal protein S28-A

Chain AY

Transfer RNA; tRNA

Chain v

40S ribosomal protein S5