IL_6GQV_188

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQV_188 not in the Motif Atlas

Homologous match to IL_4V88_445

Geometric discrepancy: 0.2966

The information below is about IL_4V88_445

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6GQV|1|2|G|1178
6GQV|1|2|G|1179
*
6GQV|1|2|C|1459
6GQV|1|2|A|1460
6GQV|1|2|C|1461

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AF

40S ribosomal protein S15

Chain AI

40S ribosomal protein S18-A

Chain AY

Transfer RNA; tRNA