IL_6GQV_201

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUA*UGGAAG

Length

9 nucleotides

Bulged bases

6GQV|1|2|U|1390

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQV|1|2|C|1389
6GQV|1|2|U|1390
6GQV|1|2|A|1391
*
6GQV|1|2|U|1407
6GQV|1|2|G|1408
6GQV|1|2|G|1409
6GQV|1|2|A|1410
6GQV|1|2|A|1411
6GQV|1|2|G|1412

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AG

40S ribosomal protein S16-A

Chain AH

40S ribosomal protein S17-B

Chain AS

40S ribosomal protein S28-A

Chain AV

Guanine nucleotide-binding protein subunit beta-like protein

Chain v

40S ribosomal protein S5