IL_6GQV_237
3D structure
- PDB id
- 6GQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- ACAUAGAGGGUGUAGAAUAAGUG*CACUACCUUUAUAGUU
- Length
- 39 nucleotides
- Bulged bases
- 6GQV|1|1|G|2452, 6GQV|1|1|U|2453, 6GQV|1|1|U|2498
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GQV|1|1|A|2443
6GQV|1|1|C|2444
6GQV|1|1|A|2445
6GQV|1|1|U|2446
6GQV|1|1|A|2447
6GQV|1|1|G|2448
6GQV|1|1|A|2449
6GQV|1|1|G|2450
6GQV|1|1|G|2451
6GQV|1|1|G|2452
6GQV|1|1|U|2453
6GQV|1|1|G|2454
6GQV|1|1|U|2455
6GQV|1|1|A|2456
6GQV|1|1|G|2457
6GQV|1|1|A|2458
6GQV|1|1|A|2459
6GQV|1|1|U|2460
6GQV|1|1|A|2461
6GQV|1|1|A|2462
6GQV|1|1|G|2463
6GQV|1|1|U|2464
6GQV|1|1|G|2465
*
6GQV|1|1|C|2490
6GQV|1|1|A|2491
6GQV|1|1|C|2492
6GQV|1|1|U|2493
6GQV|1|1|A|2494
6GQV|1|1|C|2495
6GQV|1|1|C|2496
6GQV|1|1|U|2497
6GQV|1|1|U|2498
6GQV|1|1|U|2499
6GQV|1|1|A|2500
6GQV|1|1|U|2501
6GQV|1|1|A|2502
6GQV|1|1|G|2503
6GQV|1|1|U|2504
6GQV|1|1|U|2505
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AY
- Transfer RNA; tRNA
- Chain BA
- 60S ribosomal protein L1-A
- Chain i
- 60S ribosomal protein L36-A
- Chain r
- 40S ribosomal protein S1-A
Coloring options: