IL_6GQV_241
3D structure
- PDB id
- 6GQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UAUAAG*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GQV_241 not in the Motif Atlas
- Homologous match to IL_8C3A_398
- Geometric discrepancy: 0.3442
- The information below is about IL_8C3A_398
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34063.1
- Basepair signature
- cWW-tSH-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6GQV|1|2|U|64
6GQV|1|2|A|65
6GQV|1|2|U|66
6GQV|1|2|A|67
6GQV|1|2|A|68
6GQV|1|2|G|69
*
6GQV|1|2|U|82
6GQV|1|2|G|83
6GQV|1|2|A|84
6GQV|1|2|A|85
6GQV|1|2|A|86
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AO
- 40S ribosomal protein S24-A
- Chain w
- 40S ribosomal protein S6-A
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