IL_6GQV_245

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AAUAAGGAUUG*CUUGAUUUU

Length

20 nucleotides

Bulged bases

6GQV|1|2|G|1228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQV|1|2|A|1223
6GQV|1|2|A|1224
6GQV|1|2|U|1225
6GQV|1|2|A|1226
6GQV|1|2|A|1227
6GQV|1|2|G|1228
6GQV|1|2|G|1229
6GQV|1|2|A|1230
6GQV|1|2|U|1231
6GQV|1|2|U|1232
6GQV|1|2|G|1233
*
6GQV|1|2|C|1252
6GQV|1|2|U|1253
6GQV|1|2|U|1254
6GQV|1|2|G|1255
6GQV|1|2|A|1256
6GQV|1|2|U|1257
6GQV|1|2|U|1258
6GQV|1|2|U|1259
6GQV|1|2|U|1260

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AA

40S ribosomal protein S10-A

Chain AC

40S ribosomal protein S12

Chain AT

40S ribosomal protein S29-A

Chain AW

Ubiquitin-40S ribosomal protein S31