IL_6GQV_246

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUAAAUAGUGGUGC*GUUAUCCACUUCUUAG

Length

30 nucleotides

Bulged bases

6GQV|1|2|U|1347, 6GQV|1|2|G|1351, 6GQV|1|2|U|1353, 6GQV|1|2|U|1370

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQV|1|2|C|1342
6GQV|1|2|U|1343
6GQV|1|2|A|1344
6GQV|1|2|A|1345
6GQV|1|2|A|1346
6GQV|1|2|U|1347
6GQV|1|2|A|1348
6GQV|1|2|G|1349
6GQV|1|2|U|1350
6GQV|1|2|G|1351
6GQV|1|2|G|1352
6GQV|1|2|U|1353
6GQV|1|2|G|1354
6GQV|1|2|C|1355
*
6GQV|1|2|G|1368
6GQV|1|2|U|1369
6GQV|1|2|U|1370
6GQV|1|2|A|1371
6GQV|1|2|U|1372
6GQV|1|2|C|1373
6GQV|1|2|C|1374
6GQV|1|2|A|1375
6GQV|1|2|C|1376
6GQV|1|2|U|1377
6GQV|1|2|U|1378
6GQV|1|2|C|1379
6GQV|1|2|U|1380
6GQV|1|2|U|1381
6GQV|1|2|A|1382
6GQV|1|2|G|1383

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AG

40S ribosomal protein S16-A

Chain AJ

40S ribosomal protein S19-A

Chain AK

40S ribosomal protein S20

Chain AV

Guanine nucleotide-binding protein subunit beta-like protein