IL_6GSJ_123

3D structure

PDB id

6GSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6GSJ|1|14|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSJ_123 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1135

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6GSJ|1|14|C|1686
6GSJ|1|14|G|1687
6GSJ|1|14|U|1688
6GSJ|1|14|A|1689
6GSJ|1|14|A|1690
6GSJ|1|14|C|1691
*
6GSJ|1|14|G|1696
6GSJ|1|14|G|1697
6GSJ|1|14|A|1698
6GSJ|1|14|G|1699
6GSJ|1|14|A|1700
6GSJ|1|14|A|1701
6GSJ|1|14|G|1702

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 1G

Small subunit ribosomal RNA; SSU rRNA