IL_6GSJ_162

3D structure

PDB id

6GSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CACGGCGUCAAGCCGGUAAG*CGAGG

Length

25 nucleotides

Bulged bases

6GSJ|1|14|U|2797, 6GSJ|1|14|C|2798, 6GSJ|1|14|A|2799

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSJ|1|14|C|2789
6GSJ|1|14|A|2790
6GSJ|1|14|C|2791
6GSJ|1|14|G|2792
6GSJ|1|14|G|2793
6GSJ|1|14|C|2794
6GSJ|1|14|G|2795
6GSJ|1|14|U|2797
6GSJ|1|14|C|2798
6GSJ|1|14|A|2799
6GSJ|1|14|A|2801
6GSJ|1|14|G|2802
6GSJ|1|14|C|2803
6GSJ|1|14|C|2804
6GSJ|1|14|G|2805
6GSJ|1|14|G|2807
6GSJ|1|14|U|2808
6GSJ|1|14|A|2809
6GSJ|1|14|A|2810
6GSJ|1|14|G|2811
*
6GSJ|1|14|C|2889
6GSJ|1|14|G|2891
6GSJ|1|14|A|2892
6GSJ|1|14|G|2893
6GSJ|1|14|G|2894

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L3

Chain A5

50S ribosomal protein L22