IL_6GSJ_188

3D structure

PDB id

6GSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSJ_188 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1473

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6GSJ|1|1G|G|409
6GSJ|1|1G|G|410
6GSJ|1|1G|A|411
6GSJ|1|1G|A|412
6GSJ|1|1G|G|413
6GSJ|1|1G|A|414
6GSJ|1|1G|A|415
6GSJ|1|1G|G|416
*
6GSJ|1|1G|U|427
6GSJ|1|1G|G|428
6GSJ|1|1G|U|429
6GSJ|1|1G|A|430
6GSJ|1|1G|A|431
6GSJ|1|1G|A|432
6GSJ|1|1G|C|433

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 32

30S ribosomal protein S4