IL_6GSJ_313

3D structure

PDB id

6GSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

6GSJ|1|1H|C|2111, 6GSJ|1|1H|G|2112, 6GSJ|1|1H|A|2117, 6GSJ|1|1H|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSJ_313 not in the Motif Atlas

Geometric match to IL_1KXK_003

Geometric discrepancy: 0.2526

The information below is about IL_1KXK_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6GSJ|1|1H|G|2110
6GSJ|1|1H|C|2111
6GSJ|1|1H|G|2112
6GSJ|1|1H|U|2113
6GSJ|1|1H|A|2114
6GSJ|1|1H|G|2115
6GSJ|1|1H|G|2116
6GSJ|1|1H|A|2117
6GSJ|1|1H|U|2118
6GSJ|1|1H|A|2119
6GSJ|1|1H|G|2120
*
6GSJ|1|1H|C|2178
6GSJ|1|1H|C|2179

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 3K

Transfer RNA; tRNA