IL_6GSK_002

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GU*GAC

Length

5 nucleotides

Bulged bases

6GSK|1|13|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_002 not in the Motif Atlas

Homologous match to IL_6CZR_114

Geometric discrepancy: 0.1261

The information below is about IL_6CZR_114

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

6GSK|1|13|G|44
6GSK|1|13|U|45
*
6GSK|1|13|G|396
6GSK|1|13|A|397
6GSK|1|13|C|398

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 69

50S ribosomal protein L9

Chain 7I

30S ribosomal protein S16