IL_6GSK_017

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_017 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1316

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6GSK|1|13|G|409
6GSK|1|13|G|410
6GSK|1|13|A|411
6GSK|1|13|A|412
6GSK|1|13|G|413
6GSK|1|13|A|414
6GSK|1|13|A|415
6GSK|1|13|G|416
*
6GSK|1|13|U|427
6GSK|1|13|G|428
6GSK|1|13|U|429
6GSK|1|13|A|430
6GSK|1|13|A|431
6GSK|1|13|A|432
6GSK|1|13|C|433

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 3E

30S ribosomal protein S4