IL_6GSK_023

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GGC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_023 not in the Motif Atlas

Homologous match to IL_4LFB_024

Geometric discrepancy: 0.1252

The information below is about IL_4LFB_024

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

6GSK|1|13|G|594
6GSK|1|13|G|595
6GSK|1|13|C|596
*
6GSK|1|13|G|644
6GSK|1|13|C|645

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 7E

30S ribosomal protein S8

Chain 8I

30S ribosomal protein S17