IL_6GSK_039

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GAAC*GGUGCCCCGCGAGGGGAGC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSK|1|13|G|1003
6GSK|1|13|A|1004
6GSK|1|13|A|1005
6GSK|1|13|C|1006
*
6GSK|1|13|G|1023
6GSK|1|13|G|1024
6GSK|1|13|U|1025
6GSK|1|13|G|1026
6GSK|1|13|C|1027
6GSK|1|13|C|1028
6GSK|1|13|C|1028|||A
6GSK|1|13|C|1028|||B
6GSK|1|13|G|1029
6GSK|1|13|C|1030
6GSK|1|13|G|1031
6GSK|1|13|A|1032
6GSK|1|13|G|1032|||A
6GSK|1|13|G|1032|||B
6GSK|1|13|G|1033
6GSK|1|13|G|1034
6GSK|1|13|A|1035
6GSK|1|13|G|1036
6GSK|1|13|C|1037

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA