IL_6GSK_061

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

6GSK|1|14|A|443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_061 not in the Motif Atlas

Homologous match to IL_7A0S_002

Geometric discrepancy: 0.0906

The information below is about IL_7A0S_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

6GSK|1|14|G|36
6GSK|1|14|C|37
*
6GSK|1|14|G|442
6GSK|1|14|A|443
6GSK|1|14|C|444

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 39

50S ribosomal protein L4

Chain 85

50S ribosomal protein L20