IL_6GSK_066

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_066 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0744

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6GSK|1|14|U|239
6GSK|1|14|G|240
6GSK|1|14|A|241
6GSK|1|14|G|242
6GSK|1|14|U|243
6GSK|1|14|A|244
6GSK|1|14|G|245
*
6GSK|1|14|C|253
6GSK|1|14|G|254
6GSK|1|14|A|255
6GSK|1|14|A|256
6GSK|1|14|A|257
6GSK|1|14|G|258

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 35

50S ribosomal protein L15

Chain M5

50S ribosomal protein L35